I'm not going to post numbers, but I want to offer up an approach that really works well for me.
First, using the tune-bot page, select frequencies from their page, selecting among the low, medium, high resonance sections, per your own preference.
Bring the tom up to those frequencies, both reso and batter. But then, tune the batter again by the Note, not the frequency number. Sounds obvious, but it makes a Giant, musical difference. You'll thank me later.
I agree with this, the Tune-Bot suggested frequencies get you close to the fundamental note, but not quite there.
I don't have my frequency numbers with me, but I can talk all day about the fundamentals I tune to...
First, the snare - I have settled on a G# for the snare as a good, all-purpose tuning (299/398 I believe). I'll go higher or lower for special situations, but for the most part I tune all my snares this way. It has enough cut, while still retaining some warmth and punch.
For the kick, I usually tune to a E for 22" and F# for 20".
Fundamentals of the toms depend on what configuration I'm running. Here are the most common setups I'll play:
1-up/1-down I'll usually tune to a perfect 5th interval.
12/14 A#/D# (but sometimes I'll tune to a 4th since they are so close in size, A/E)
12/16 A/D
13/16 G/C
1-up/2-down, perfect 4ths
12/14/16 A/E/B would be ideal, but B is pretty floppy for a 16, so more often I go A/E/C
2-up/1-down, a power chord (root/5th/octave)
10/12/16 D/A/D or C/G/C
10/12/14 D#/A#/D# (Dave Weckl's tuning)
10/13/16 fifths all the way (D/G/C)
2-up/2-down, I try to stick to 4th's but sometimes it's too low for the 16
10/12/14/16 D/A/E/B (D/A/E/C if the 16 is too loose)
A major chord also works well (C/G/E/C or D/A/F#/D)
Some folks like the "call to post" intervals (D/G/B/D), and this is good for getting good tone from the 16 without cranking the rack toms up too high.
3-up/2-down, I've tried two different tunings, and I like them both
8/10/12/14/16 G/D/A/E/B, same as the string tunings on a 5-string bass
I also like Phil Collins's tuning, which is a Dm7 chord (D/C/A/F/D)
All this is just for mid-range pop/rock tunings. Many more possibilities when you consider tuning very low or bop tunings.